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Quantitative analysis for short-chain chlorinated paraffins(SCCPs) Perform peaks list alignment and return features table Get a mzrt list and/or save mz and rt range as csv file. Get the index with power restriction for certain study with BH adjusted p-value and certain power.Ĭompute pooled QC linear index according to run order Get the overlap peaks by mass and retention time range Get the mzrt profile and group information for batch correction and plot as a list for xcms 3 object Get the mzrt profile and group information as a mzrt list and/or save them as csv or rds for further analysis. Get the mzrt profile and group information for batch correction and plot as a list directly from path with default settingĪnnotation of MS1 data by compounds database by predefined paired mass distance Get the high order unit based Mass Defect Import data and return the annotated matrix for GC/LC-MS by m/z range and retention time Get mass defect with certain scaled factor Get the exact mass of the isotopologues from a chemical formula or reaction's isotope patterns with the highest abundances Get the report for samples with biological and technique replicates in different groups Get chemical formula for mass to charge ratio.
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Get the features from t test, with p value, q value, rsd and power restrictionįilter the data based on row and column index Get the features from anova, with p value, q value, rsd and power restriction Generate the group level rsd and average intensity based on DoE,ĭensity weighted intensity for one sample Get XCMSnExp object in one step from structured folder path for xcms 3. Get xcmsset object in one step with optimized methods. Get the report for biological replicates.Īlign multiple peaks list to one peak list Get the peak list with blank samples' peaks removed Get the peak information from SCCPs standards Get the peak information from samples for SCCPs detection
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Get the data of QC compound for a group of dataĪlign two peaks vectors by mass to charge ratio and/or retention timeĪlign mass to charge ratio and/or retention time to remove redundancy Read in MSP file as list for ms/ms or ms(EI) annotation Also support compounds with and ratio cutoff. Screen organohalogen compounds by retention time, mass defect analysis and isotope relationship modified by literature report. Perform MS/MS dot product annotation for mgf fileįind line of the regression model for GC-MSįind lipid class of metabolites base on referenced Kendrick mass defect Get the MIR and related information from the filesĬombine two data with similar retention time while different mass range Just integrate data according to fixed rt and fixed noise areaĭemo data for TBBPA metabolism in Pumpkin Get the selected isotopologues at certain MS data GetIntegration was mainly used for get the integration of certain ion's chromatogram data and plot the data